General Usage¶
xpressplot is intended as a all-in-one toolkit and interface for analysis of sequencing data
Sequence Data¶
Required format for all functions (unless otherwise noted in documentation).
>>> geo.head()
GSM523242 GSM523243 GSM523244 GSM523245 GSM523246 GSM523247 ...
1007_s_at 8.98104 8.59941 8.25395 8.72981 8.70794 8.10693 ...
1053_at 5.84313 6.59168 8.27881 6.64005 4.65107 7.19090 ...
121_at 6.17189 5.73603 5.55673 5.69374 6.77618 5.84524 ...
1294_at 6.97009 6.80003 5.56620 7.43816 7.36375 5.85687 ...
1405_i_at 10.24611 10.13807 8.84743 9.72365 10.42940 9.17510 ...
Metadata¶
Required format for all functions (unless otherwise noted in documentation).
>>> geo.head()
0 1
0 GSM523242 mucosa_normal_colon_1 (micro)
1 GSM523243 mucosa_normal_colon_2 (micro)
2 GSM523244 mucosa_adenoma_3 (micro)
3 GSM523245 colonic_crypt_epithelial_cells_normal_colon_4 ...
4 GSM523246 mucosa_normal_colon_5 (micro)